Publications

^† Corresponding, * leading

2024

Kato, H., Takahashi, Y., Suzuki, H., Ohashi, K., Kawashima, R., Nakamura, K., Sakai, K., Hori, C., Takasuka, T.E., Kato, M., Shimizu, M. (2024) "Identification and characterization of methoxy- and dimethoxyhydroquinone 1,2-dioxygenase from Phanerochaete chrysosporium." Appl. Environ. Microbiol., DOI:10.1128/aem.01753-23.

Banko, P., Okimune, K-I., Nagy, S.K., Hamasaki, A., Morishita, R., Onouchi, H., Takasuka, T.E.^† (2024) "In vitro co-expression chromatin assembly and remodeling platform for plant histone variants" Sci. Rep., DOI:10.1038/s41598-024-51460-6.

2023

Takasuka, T.E.*, Kim, H., Deng, K., Bianchetti, C.M., Yamashita, K., Beebe, E.T., Bergeman, L.F., Vander Meulen, K.A., Deutsch, S., Ralph, J., Adams, P,D., Northen, T.R., Fox, B.G. (2023) "Quantitative analysis of the high yield hydrolysis of kelp by laminarinase and alginate lyase" ChemBioChem, DOI:10.1002/cbic.202300357.

Takeda, S., Hamamuki, A., Ushirogata, K., Takasuka, T.E. (2023) "Binding properties of recombinant LDL receptor and LOX-1 receptor to LDL measured using bio-layer interferometry and atomic force microscopy." Biophys. Chem., DOI:10.1016/j.bpc.2023.107069.

Inoue, D., Ohashi, K., Takasuka, T.E., Kakugo, A. (2023) "In vitro synthesis and design of kinesin biomolecular motors by cell-free protein synthesis." ACS Synth. Biol., DOI:10.1021/acssynbio.3c00235.

Matsumoto, R., Mehjabin, J., Noguchi, H., Miyamoto, T., Takasuka, T.E., Hori, C. (2023) "Genomics and secretomic approaches of the newly isolated Perenniporia fraxinea SS3 identified CAZymes potentially related to a serious pathogenesis of hardwood trees." Appl. Environ. Microbiol., DOI:10.1128/aem.00272-23.

Kumar, V., Fox, B.G., Takasuka, T.E.^† (2023) "Consolidated bioprocessing of plant biomass to polyhydroxyalkanoate by co-culture of Streptomyces sp. SirexAA-E and Priestia megaterium" Biores. Technol., DOI:10.1016/j.biortech.2023.128934.

2022

Koper, K., Hataya, S., Hall, A.G., Takasuka, T.E., Maeda, H.A. (2022) "Biochemical characterization of plant aromatic aminotransferases" Methods Enzymol., DOI: 10.1016/bs.mie.2022.07.034.

2021

Anabuki, T., Ohashi, K., Takasuka, T.E., Matsuura H., Takahashi K. (2021) "AtTrxh3, a thioredoxin, is identified as an abscisic acid binding protein in Arabidopsis thaliana." Molecules, DOI:10.3390/molecules2701016.

Okimune, K., Hataya, S., Matsumoto, K., Ushirogata, K., Banko, P., Takeda, S., Takasuka, T.E.^† (2021) "Histone chaperone-mediated co-expression assembly of tetrasomes and nucleosomes." FEBS open bio, DOI:10.1002/2211-5463.13311.

Ohashi, K., Hataya, S., Nakata, A., Matsumoto, K., Kato, N., Sato, W., Carlos-Shanley, C., Beebe, E.T., Currie, C.R., Fox, B.G., Takasuka, T.E.^† (2021) "Mannose and mannobiose specific responses of insect associated cellulolytic Streptomyces." Appl. Environ. Microbiol., DOI:10.1128/AEM.02719-20.

Endo, Y., Takemori, N., Nagy, S.K., Okimune, K., Rohinton, K., Onouchi, H., Takasuka, T.E.^† (2021) "De novo reconstitution of chromatin using wheat germ cell-free protein syntehsis. FEBS open bio, DOI:10.1002/2211-5463.13178.

2020

Hori, C., Song, R., Matsumoto, K., Matsumoto, R., Minkoff, B.B., Oita, S., Hara, H., Takasuka, T.E.^† (2020) "Proteomic characterization of lignocellulolytic enzymes secreted by the insect-associated fungus, Daldinia decipiens oita, isolated from the forest in northern Japan" Appl. Environ. Microbiol., DOI:10.1128/AEM.02350-19.

Glasgow, E.M., Kemna, E.I., Bingman, C.A., Ing, N.L., Deng, K., Bianchetti, C.M., Takasuka, T.E., Northen, T.R., Fox, B.G. (2020) "A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunitites for biomass hydrolysis" J Biol. Chem., DOI:10.1074/jbc.RA120.015328.

Okimune, K., Nagy, S.K., Hataya, S., Endo, Y., Takasuka, T.E.^† (2020) "Reconstitution of Drosophila and human chromatins by wheat germ cell-free co-expression system" BMC Biotechnol., DOI:10.1186/s12896-020-00655-6.

Yoshinari, A., Hosokawa, T., Beier, M.P., Oshima, K., Ogino, Y., Hori, C., Takasuka, T.E., Fukao, Y., Fujiwara, T., Takano J. (2020) "Transport-coupled ubiquitination of the borate transporter BOR1 for its boron-dependent degradation." The Plant cell, DOI:10.1093/plcell/koaa020.

2019

Anabuki, T., Ito, Y., Ohashi, K., Takasuka, T.E., Matsuura, H., Takahashi, K. (2019) "Identification of recombinant AtPYL2, an abscisic acid receptor, in E. coli using a substrate-derived bioactive small molecule, a biotin linker with alkyne and amino groups, and a protein cross-linker" Bioorg. Med. Chem. Lett., DOI:10.1016/j.bmcl.2019.126634.

Watanabe, T., Kojima, H., Umezawa, K., Hori, C., Takasuka, T.E., Kato, Y., Fukui, M. (2019) "Genomes of neutrophilic sulfur-oxidizing chemolithoautotrophs representing 9 proteobacterial species from 8 genera" Front. Microbiol., DOI:10.3389/fmicb.2019.00316.

Glasgow, E.M., Vander Meulen, K.A., Takasuka, T.E., Bianchetti, C.M., Bergeman, L.F., Deutsch, S., Fox, B.G. (2019) "Extent and origins of functional diversity in a subfamily of glycoside hydrolases" J. Mol. Biol., DOI:10.1016/j.jmb.2019.01.024.

2018

Terashima, M., Ohashi, K., Takasuka, T.E., Kojima, H. Fukui, M. (2018) "Antarctic heterotrophic bacterium Hymenobacter nivis P3^T displays light-enhanced growth and expresses putative photoactive proteins" Environ Microbiol Rep., DOI:10.1111/1758-2229.

2017

大橋慧介, 堀千明, 高須賀太一^† (2017) 「多糖類利用に向けたセルロース分解性昆虫共生細菌の発見およびそれらが産出する糖質分解酵素の機能・構造解析」 生化学誌みにれびゅう, DOI:10.14952/SEIKAGAKU.2017.890739.

Cheng, N., Koda, K., Tamai, Y., Yamamoto, Y., Takasuka, T.E.^†, Uraki, Y. (2017) "Optimization of simultaneous saccharification and fermentation conditions with amphipathic lignin derivatives for concentrated bioethanol production." Biores. Technol., DOI:May;232:126-132.

2016

Book, A.J., Lewin, G.R., McDonald, B.R., Takasuka, T.E., Wendt-Pienkowski, E., Doering, D.T., Suh, S., Raffa, K.F., Fox, B.G., Currie, C.R. (2016) "Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selction of Expanded Gene Content and Coordinated Gene Expression." PLoS Biology, DOI:10.137/journal.pbio.1002475.

高須賀太一^†, 堀千明, Ellinger, J.J., 飛松裕基. (2016) 「森林生態系におけるキバチ共生細菌による木質分解 ノクチリオキバチの木材生分解にかかわる酵素の探索」 化学と生物, 54(4), 156-158.

2015

Walker, J.A.*, Takasuka, T.E.*, Deng, K., Bianchetti, C.M., Udell, H.S., Prom, B.M., Kim, H., Northen, T.R., and Fox, B.G. (2015) “Multifunctional cellulase catalysis targeted by fusion to different carbohydrate binding modules.” Biotechnol. Biofuels., 8, 220.

Deng, K., Takasuka, T.E., Bianchetti, C.M., Bergeman, L.F., Adams, P.D., Northen, T.R., and Fox, B.G. (2015) “Use of Nanostructure-initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases.” Front. Bioeng. Biotenchol., 3, 165.

Deng, K., Guenther, J.M., Gao, J., Bowen, B.P., Tran, H., Reyes-Ortiz, V., Cheng, X., Sathitsuksanoh, N., Heins, R., Takasuka, T.E., Bergeman, L.F., Geertz-Hansen, H., Deutsch, S., Loque, D., Sale, K.L., Simmons, B.A., Adams, P.D., Singh, A.K., Fox, B.G., and Northen, T.R. (2015) “Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS.” Front. Bioeng. Biotenchol., 3, 153.

Bianchetti, C.M.*, Takasuka, T.E.*, Udell, SH., Yik, E, Bergeman, L.F., Deutsch, S., and Fox, B.G. (2015) “Active site and laminarin binding in glycoside hydrolase family 55” J. Biol Chem., pii: jbc.M114.623579.

2014

Book, A.J., Lewin, G.R., McDonald B.R., Takasuka, T.E., Doering, D.T., Adams, A.S., Blodgett, J.A.V., Clardy, J., Raffa, K.F., Fox , B.G., and Currie, C.R. (2014) “Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically-linked capacity for the degradation of lignocellulose” Appl. Environ. Microbiol., 80(15):4692-701.

Takasuka, T.E.*, Walker, J.A., Bergeman, L.F., Vander Meulen, K.A., Makino, S.I., Elsen, N.L., Fox, B.G. (2014) “Cell-free translation of biofuels enzymes.” Methods. Mol. Biol., DOI: 10.1007/978-1-62703-782-2_5

Book A.J.*, Yannamalli, R.M.*, Takasuka, T.E.*, Currie, C.R., Phillips, G.N.Jr., and Fox, B.G. (2014) “Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases” Biotechnol Biofuels., DOI: 10.1186/1754-6834-7-109. eCollection 2014.

Deng, K., Takasuka, T.E., Heins, R., Cheng, X., Bergeman, L.F., Shi, J., Achenbrener, R., Deutsch, S., Singh, S., Sale, K.L., Simmons, B.A., Adams, P.D., Singh, A.K., Fox, B.G., and Northen, T.R. (2014) “Rapid Kinetic Characterization of Glycosyl Hydrolases Based on Oxime Derivatization and Nanostructure-Initiator Mass Spectrometry (NIMS)” ACS Chem. Biol., DOI:10.1021/cb5000289. Epub 2014 May 12.

Takasuka, T.E.*, Acheson, J.F, Bianchetti, C.M., Prom, B.M., Bergeman, L.F, Book, A.J, Currie, C.R., and Fox, B.G. (2014) “Atomic resolution structure and biochemical properties of a proteolytically processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E” PLoS One 9, e94166.

Takasuka, T.E.*^†, Hsieh, Y.J., and Stein, A. (2014) “Miniaturized sequencing gel analysis for DNA footprinting” Appl. Biochem. Biotechnol., 172, 1-8.

2013

Takasuka, T.E.*, Bianchetti, C.M.*, Tobimatsu, Y., Bergeman, L.F, Ralph, J., and Fox, B.G. (2013) “Structure and function of abundantly secreted chitosanase SACTE_5457 from Streptomyces sp. SirexAA-E.” Proteins: Str. Func. And Bioinfo., DOI:10.1002/prot.24491.

Bianchetti, C.M., Harmann, C.H., Takasuka, T.E., Hura, G.L., Dyer,K, and Fox, B.G. (2013) “Fusion of Dioxygenase and Carbohydrate-Binding Module in a Novel Secreted Caffeoyl-CoA Dioxygenase from Cellulolytic Streptomyces sp. SirexAA-E” J. Biol. Chem., 288 18574-18587.

Chandrasekaran, A. Deng, K., Koh, C.Y., Takasuka, T., Bergeman, L.F., Fox, B.G., Adams, P, and Singh, A.K. (2013) “A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres.” ChemComm., 49, 5441-5443.

Takasuka, T.E.*, Book, A.J., Lewin, G.R., Currie, C.R., and Fox, B.G. (2013) “Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces.” Sci. Rep., 3, 1030.

2011

Riederer, A., Takasuka, T.E., Makino, S., Stevenson, D.M., Bukhman, Y., Elsen, N.L., and Fox, B.G. (2011) “Global gene expression patterns in Clostridium thermocellum from microarray analysis of chemostat culture on cellulose or cellobiose.” Appl. Environ. Microbiol., 77, 1243-1253.

2010

Miller, A., Chen, J., Takasuka, T.E., Kaufman, P.D., Jacobi, J.L., Irudayaraj, J.M.K., and Kirchmaier, A.L. (2010) “Proliferating cell nuclear antigen (PCNA) is required for cell- cycle regulated silent chromatin on replicated and nonreplicated genes.” J Biol. Chem., 285, 35142-35154.

Takasuka, T.E.*, and Stein, A. (2010) “Direct measurements of the nucleosome-forming preferences of periodic DNA motifs challenge established models.” Nucl. Acids. Res., 38, 5672-5680.

Stein, A., Takasuka, T.E., and Collings, C.K. (2010) “Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?” Nucl. Acids. Res., 38, 709-719.

2008

Takasuka, T.E.*, Cioffi, A., and Stein, A. (2008) “Sequence information encoded in DNA that may influence long-range chromatin structure correlates with human chromosome functions.” PLoS One, 3 e2643.

その他

高須賀太一 (2019) 「研究室紹介 -北海道大学大学院農学研究院 ゲノム生化学研究室-」 生化学誌　北から南から, 6, 829-730.

Nagy, S.K., Banko, P., Tar, A., Bendali, K., Meszaros, Takasuka, T.E. (2021) "Human chromatin reconstitution by cell-free translation for epigenetic modifier enzyme assays." FEBS openbio, 11 77-78.

Ravankar, R.A., Imai, S., Shimamura, M., Chiba G. and Takasuka, T.E. (2017) “Problem-based learning and problem finding among university graduate students.” Jounal of Higher Education and Lifelong Learning, 24 9-20.

Imai, S., Ravankar, R.A., Shimamura, M., Takasuka, T.E., Chiba G. and Yamanaka, Y. (2017) “Effect of instructor's actions and attitudes on student's motivation and discussion process in TBL class for graduate students.” International Jounal of Institutional Research and Management, 1 17-35.