Publications
- Amin A.N.N., Hayashi S., Bartlem D.G. (2014) A robust in vitro assay system for quantitative analysis of parasitic root-knot nematode infestation using Lotus japonicus. Journal of Bioscience and Bioengineering, in press.
- Bartlem D.G., Jones M.G.K., Hammes UZ. (2014) Vascularization and nutrient delivery at root-knot nematode feeding sites in host roots. Journal of Experimental Botany, in press. [link]
- Goto D.B., Miyazawa H., Mar J.C., Sato M. (2013) Not to be suppressed? Rethinking the host response at a root-parasite interface. Plant Science, 213: 9-17 [link]
* Derek used the surname of "Goto" between 2002 and 2013.
- Goto D.B., Nakayama J. (2012) RNA and epigenetic silencing: Insight from fission yeast. Development Growth & Differentiation, 54: 129-141. [link - open access]
- Zaratiegui M., Castel S.E., Irvine D.V., Kloc A., Ren J., Li F., de Castro E., Marin L., Chang A.Y., Goto D., Cande W.Z., Antequera F., Arcangioli B., Martienssen R.A. (2011) RNA interference promotes heterochromatic silencing through replication-coupled release of RNA polymerase II. Nature, 479: 135-138. [link]
- Jones M.G.K., Goto D.B. (2011) Root knot nematodes and giant cells. In: Genomics and molecular genetics of plant-nematode interactions. Eds: J. Jones, G. Gheysen, C. Fenoll. Springer, London. pp 83-100. ISBN 978-94-007-0433-6. [link]
- Sato T., Maekawa S., Yasuda S., Domeki Y., Sueyoshi K., Fujiwara M., Fukao Y., Goto D.B., Yamaguchi J. (2011) Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis. Plant Journal, 68: 137-146. [link]
- Onoue N., Yamashita Y., Nagao N., Goto D.B., Onouchi H., Naito S. (2011) S-Adenosyl-L-methionine induces compaction of nascent peptide chain inside the ribosomal exit tunnel upon translation arrest in the Arabidopsis CGS1 gene. Journal of Biological Chemistry, 286: 14903-14912. [link]
- Zaratiegui M., Vaughn M.W., Irvine D.V., Goto D., Watt S., Bahler J., Arcangioli B., Martienssen R.A. (2011) CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature, 469: 112-115. [link]
- Goto D.B., Fosu-Nyarko J., Sakuma F., Sadler J., Flottman-Reid M., Uehara T., Kondo N., Yamaguchi J., Jones M.G.K. (2010) In planta observation of live fluorescent plant endoparasitic nematodes during early stages of infection. Nematological Research, 40: 15-19. [pdf]
- Sako K., Maki Y., Imai K., Aoyama T., Goto D.B., Yamaguchi J. (2010) Control of endoreduplication of trichome by RPT2a, a subunit of the 19S proteasome in Arabidopsis. Journal of Plant Research, 123: 701-706. [link]
- Sato A., Sato Y., Fukao Y., Fujiwara M., Umezawa T., Shinozaki K., Hibi T., Taniguchi M., Miyake H., Goto D.B., Uozumi N. (2009) Threonine at position 306 of the KAT1 potassium channel is essential for channel activity and is a target site for ABA-activated SnRK2/OST1/SnRK2.6 protein kinase. Biochemical Journal, 424: 439-448. [link]
- Sato T., Maekawa S., Yasuda S., Sonoda Y., Katoh E., Ichikawa T., Nakazawa M., Seki M., Shinozaki K., Matsui M., Goto D.B., Ikeda A., Yamaguchi J. (2009) CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings. Plant Journal, 60: 852-864. [link]
- Irvine D.V., Goto D.B., Vaughn M.W., Nakaseko Y., McCombie W.R., Yanagida M., Martienssen R. (2009) Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing. Genome Research, 19: 1077-1083. [link]
- Murakami H., Goto D.B., Toda T., Chen E.S., Grewal S.I., Martienssen R.A., Yanagida M. (2007) Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function. PLoS ONE, 2(3): e317. [link]
- Irvine D.V., Zaratiegui M., Tolia N.H., Goto D.B., Chitwood D.H., Vaughn M.W., Joshua-Tor L., Martienssen R.A. (2006) Argonaute slicing is required for heterochromatic silencing and spreading. Science, 313: 1134-1137. [link]
- *Li F., *Goto D.B., Zaratiegui M., Tang X., Martienssen R., Cande W.Z. (2005) Two novel proteins, Dos1 and Dos2, interact with Rik1 to regulate heterochromatic RNA interference and histone modification. Current Biology, 15: 1448-1457. *co-first authors
- Goto D.B., Onouchi H., Naito S. (2005) Dynamics of methionine biosynthesis. Plant Biotechnology, 22: 379-388.
- Kato H., Goto D.B., Martienssen R.A., Urano T., Furukawa K., Murakami Y. (2005) RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science, 309: 467-469.
- Martienssen R.A., Zaratiegui M., Goto D.B. (2005) RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends in Genetics, 21: 450-456.
- Tsujimoto Y., Numaga T., Ohshima K., Yano M., Ohsawa R., Goto D.B., Naito S.m Ishikawa M. (2003) Arabidopsis TOBAMOVIRUS MULTIPLICATION (TOM) 2 locus encodes a transmembrane protein that interacts with TOM1. EMBO Journal, 22: 335-343.
- Goto D.B., Naito S. (2002) AtMRD1 and AtMRU1, two novel genes with altered mRNA levels in the methionine over-accumulating mto1-1 mutant of Arabidopsis thaliana. Plant & Cell Physiology, 43: 923-931.
- *Ohkama N., *Goto D.B., Fujiwara T., Naito S. (2002) Differential tissue-specific response to sulfate and methionine of a soybean seed storage protein promoter region in transgenic Arabidopsis. Plant & Cell Physiology, 43: 1266-1275. *co-first authors
- Goto D.B., Ogi M., Kijima F., Kumagai T., van Werven F., Onouchi H., Naito S. (2002) A single-nucleotide mutation in a gene encoding S-adenosylmethionine synthetase is associated with methionine over-accumulation phenotype in Arabidopsis thaliana. Genes & Genetic Systems, 77: 89-95.
- Fujiwara T., Nambara E., Yamagishi K., Goto D.B., Naito S. (2002). Storage Proteins. In: The Arabidopsis Book. Eds: C.R. Somerville and E.M. Meyerowitz. American Society of Plant Biologists, Rockville, MD. DOI 10.1199-tab0020.
- Awazuhara M., Kim H., Goto D.B., Matsui A., Hayashi H., Chino M., Kim S.-G., Naito S., Fujiwara T. (2002). A 235-bp region from a nutritionally regulated soybean seed-specific gene promoter can confer its sulfur and nitrogen response to a constitutive promoter in aerial tissues of Arabidopsis thaliana. Plant Science, 163: 75-82.
- Bartlem D., Lambein I., Okamoto T., Itaya A., Uda Y., Kijima F., Tamaki Y., Nambara E., Naito S. (2000). Mutation in the threonine synthase gene results in an over-accumulation of soluble methionine in Arabidopsis. Plant Physiology, 123: 101-110.
- Bartlem D., Tamaki Y., Naito S. (1999). Genomic nucleotide sequence of the Arabidopsis threonine synthase gene (Accession No. AB027151). (PGR99-108). Plant Physiology, 120: 1205.
- Heinrich T., Bartlem D., Jones M.G.K. (1998). Molecular aspects of plant-nematode interactions and their exploitation for resistance strategies. Australasian Plant Pathology, 27: 59-72.
** Derek used the surname of "Goto" from 2002 to 2013.