| 2014 |
Sriyudthsak K., Sawada Y., Chiba Y., Yamashita Y., Kanaya S., Onouchi H., Fujiwara T., Naito S., Voit E.O., Shiraishi F., and Hirai M.Y. |
BMC Syst. Biol., in press. |
A U–system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. |
| 2014 |
Hagiwara-Komoda Y., Sugiyama T., Yamashita Y., Onouchi H., and Naito S. |
Plant Cell Physiol., in press. |
The N-terminal cleavable pre-sequence encoded in the first exon of cystathionine γ-synthase contains two different functional domains for chloroplast targeting and regulation of gene expression. |
| 2014 |
Uchiyama-Kadokura N., Murakami K., Takemoto M., Koyanagi N., Murota K., Naito S., and Onouchi H. |
Plant Cell Physiol., 55(9): 1556-67 |
Polyamine-responsive ribosomal arrest at the stop codon of an upstream open reading frame of the AdoMetDC1 gene triggers nonsense-mediated mRNA decay in Arabidopsis thaliana. |
| 2014 |
Yamashita Y, Kadokura Y, Sotta N, Fujiwara T, Takigawa I, Satake A, Onouchi H, and Naito S. |
J. Biol. Chem., 289(18): 12693-12704. |
Ribosomes in a stacked array: elucidation of the step in translation elongation at which they are stalled during S-adenosyl-L-methionine-induced translation arrest of CGS1 mRNA |
| 2013 |
Yamashita Y, Lambein I, Kobayashi S, Onouchi H, Chiba Y, and Naito S. |
Genes Genet. Syst., 88(4): 241-249 |
A halt in poly(A) shortening during S-adenosyl-L-methionine-induced translation arrest in CGS1 mRNA of Arabidopsis thaliana. |
| 2013 |
Katsuragi T., Ono N., Yasumoto K., Altaf-Ul-Amin M., Hirai M.Y., Sriyudthsak K., Sawada Y., Yamashita Y., Chiba Y., Onouchi H., Fujiwara T., Naito S., Shiraishi F., and Kanaya S. |
Plant Cell Physiol., 54(5): 728-739 |
SS-mPMG and SS-GA: Tools for Finding Pathways and Dynamic Simulation of Metabolic Networks. |
| 2013 |
Chiba Y., Mineta K., Hirai M.Y., Suzuki Y., Kanaya S., Takahashi H., Onouchi H., Yamaguchi J., and Naito S. |
Plant Cell Physiol., 54(2): 180-194. |
Changes in mRNA stability associated with cold stress in Arabidopsis cells. |
| 2012 |
Takahashi H., Takahashi, A., Naito S., and Onouchi H. |
Bioinformatics, 28(17): 2231-2241. |
BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences, and its application to the Arabidopsis thaliana genome. |
| 2011 |
Tanaka M., Takano J., Chiba Y., Lombardo F., Ogasawara Y., Onouchi H., Naito S., and Fujiwara T. |
Plant Cell, 23(9): 3547-3559. |
Boron-dependent degradation of NIP5;1 mRNA for acclimation to excess boron conditions in Arabidopsis. |
| 2011 |
Murota K., Hagiwara-Komoda Y., Komoda K., Onouchi H., Ishikawa M., and Naito S., |
Plant Cell Physiol., 52(8): 1443-1453. |
Arabidopsis cell-free extract, ACE, a new in vitro translation system derived from Arabidopsis callus cultures. |
| 2011 |
Onoue N., Yamashita Y., Nagao N., Goto D.B., Onouchi H., and Naito S. |
J. Biol. Chem., 286(17): 14903-14912. |
S-adenosyl-L-methionine induces compaction of nascent peptide chain inside the ribosomal exit tunnel upon translation arrest in the Arabidopsis CGS1 gene. |
| 2010 |
Takano, J., Tanaka, M., Toyoda, A., Miwa, K., Kasai, K., Fuji, K., Onouchi, H., Naito S., and Fujiwara, T. |
Proc. Natl. Acad. Sci. USA, 107(11), 5220-5225. |
Polar localization and degradation of Arabidopsis boron transporters through distinct trafficking pathways. |
| 2010 |
Kusano, M., Fukushima, A., Redestig, H., Kobayashi, M., Otsuki, H., Onouchi, H., Naito, S., Hirai, M.Y., and Saito, K. |
Amino Acids. 9(4): 1013-1021 |
Comparative metabolomics charts the impact of genotype-dependent methionine accumulation in Arabidopsis thaliana. |
| 2008 |
Onouchi, H., Haraguchi, Y., Nakamoto, M., Kawasaki, D., Nagami-Yamashita, Y., Murota, K., Kezuka-Hosomi, A., Chiba, Y., and Naito, S. |
Plant Cell Physiol., 49(4): 549-556. |
Nascent peptide-mediated translation elongation arrest of Arabidopsis thaliana CGS1 mRNA occurs autonomously. |
| 2008 |
Haraguchi, Y., Kadokura, Y., Nakamoto, M., Onouchi, H., and Naito, S. |
Plant Cell Physiol., 49(3): 314-323. |
Ribosome stacking defines CGS1 mRNA degradation sites during nascent peptide-mediated translation arrest. |
| 2008 |
Ohkama-Ohtsu, N., Kezuka, A., Onouchi, H., Fujiwara, T., and Naito, S. |
Soil Sci. Plant Nutr., 54(1): 128-132. |
The promoter region of the b subunit gene of b-conglycinin responds to methionine and glutathione in transient assays using Arabidopsis protoplasts. |
| 2005 |
Onouchi H., Nagami Y., Haraguchi Y., Nakamoto M., Nishimura Y., Sakurai R., Nagao N., Kawasaki D., Kadokura Y., and Naito S. |
Genes Dev., 19(15): 1799-1810. |
Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis. |
| 2005 |
Mizoguchi T., Wright L., Fujiwara S., Cremer F., Lee K., Onouchi, H., Mouradov A., Fowler S., Kamada H., Putterill J., and Coupland G. |
Plant Cell, 17(8):2255-2270. |
Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. |
| 2003 |
Lambein I., Chiba Y., Onouchi H., and Naito S. |
Plant Cell Physiol., 44(9): 893-900. |
Decay kinetics of autogenously regulated CGS1 mRNA that codes for cystathionine g-synthase in Arabidopsis thaliana. |
| 2003 |
Chiba Y., Sakurai R., Yoshino M., Ominato K., Ishikawa M., Onouchi H., and Naito S. |
Proc. Natl. Acad. Sci. USA, 100(18): 10225-10230. |
S-adenosyl-L-methionine is an effector in the posttranscriptional autoregulation of the cystathionine g-synthase gene in Arabidopsis. |
| 2002 |
Ominato K., Akita H., Suzuki A., Kijima F., Yoshino T., Yoshino M., Chiba Y., Onouchi H., and Naito S. |
J. Biol. Chem., 277(39): 36380-36386. |
Identification of a short highly conserved amino acid sequence as the functional region required for posttranscriptional autoregulation of the cystathionine g-synthase gene in Arabidopsis. |
| 2002 |
Goto D. B., Ogi M., Kijima F., Kumagai T., van Werven F., Onouchi H., and Naito S. |
Genes Genet. Syst., 77(2): 89-95. |
A single-nucleotide mutation in a gene encoding S-adenosylmethionine synthetase is associated with methionine over-accumulation phenotype in Arabidopsis thaliana. |
| 2002 |
Iwakawa H., Ueno Y., Semiarti E., Onouchi H., Kojima S., Tsukaya H., Hasebe M., Soma T., Ikezaki M., Machida C., and Machida Y. |
Plant Cell Physiol., 43(5):467-478. |
The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. |
| 2001 |
Tanaka H., Onouchi H., Kondo M., Hara-Nishimura I., Nishimura M., Machida, C., and Machida Y. |
Development, 128(23):4681-4689. |
A subtilisin-like serine protease is required for epidermal surface formation in Arabidopsis embryos and juvenile plants. |
| 2001 |
Suzuki A., Shirata Y., Ishida H., Chiba Y., Onouchi H., and Naito S. |
Plant Cell Physiol., 42(10): 1174-1180. |
The first exon coding region of cystathionine g-synthase gene is necessary and sufficient for downregulation of its own mRNA accumulation in transgenic Arabidopsis thaliana. |
| 2001 |
Suárez-López P., Wheatley K., Robson F., Onouchi H., Valverde F., and Coupland G. |
Nature, 410(6832): 1116-1120. |
CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. |
| 2001 |
Semiarti E., Onouchi H., Torikai S., Ishikawa T., Machida Y., and Machida C. |
Genes Genet. Syst., 76(2): 131-139. |
The transposition pattern of the Ac element in tobacco cultured cells. |
| 2000 |
*Samach A., *Onouchi H., Gold S. E., Ditta G. S., Schwarz-Sommer Z., Yanofsky M. F., and Coupland G. (*co-first authors) |
Science, 288(5471): 1613-1616. |
Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. |
| 2000 |
Onouchi H., Igeño M. I., Perilleux C., Graves K., and Coupland G. |
Plant Cell, 12(6): 885-900. |
Mutagenesis of plants overexpressing CONSTANS demonstrates novel interactions among Arabidopsis flowering-time genes. |
| 2000 |
Hamada S., Onouchi H., Tanaka H., Kudo M., Liu Y., Shibata D., Machida C., and Machida M. |
Plant J., 24(1): 91-101. |
Mutations in the WUSCHEL gene of Arabidopsis thaliana result in the development of shoots without juvenile leaves. |
| 1999 |
Fowler S, Lee K, Onouchi H, Samach A, Richardson K, Morris B, Coupland G, Putterill J. |
EMBO J., 18(17): 4679-4688. |
GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains. |
| 1998 |
Torres M.A., Onouchi H., Hamada S., Machida C., Hammond-Kosack K.E., and Jones J.D. |
Plant J., 14(3): 365-370. |
Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox). |
| 1997 |
Machida C., Onouchi H., Koizumi J., Hamada S., Semiarti E., Torikai S., and Machida Y. |
Proc. Natl. Acad. Sci. USA, 94(16): 8675-8680. |
Characterization of the transposition pattern of the Ac element in Arabidopsis thaliana using endonuclease I-SceI. |
| 1995 |
Onouchi H., Nishihama R., Kudo M., Machida Y., and Machida C. |
Mol. Gen. Genet., 247(6): 653-660. |
Visualization of site-specific recombination catalyzed by a recombinase from Zygosaccharomyces rouxii in Arabidopsis thaliana. |
| 1991 |
Onouchi H., Yokoi K., Machida C., Matsuzaki H., Oshima Y., Matsuoka K., Nakamura K., and Machida Y. |
Nucleic Acids Res., 19(23): 6373-6378. |
Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells. |